I wonder if you are running at idle primarily with the pilot screws. You crack open the throttle and you are using the mains. I think roll-on throttle depends more on a good pilot jet and circuit.
If you goose it and you get good ignition past that trouble zone of rpms, and you have good ignition at idle, I have a hard time believing that the HT coils/plugs/wires are an issue.
You said you pulled the vacuum advance hose and it seemed to run better. Did you plug off the entrance to the carb? If not, you allowed air in the mix and leaned carb No. 2. You were having issues with overly rich mixtures. When hot, the engine will run richer. Allowing air with the hose unplugged and with it running slightly better might indicate that it is rich when hooked back up.
Make double sure you have the correct pilot jets, even if they are mikunis.
Make sure that the gaskets (if you replaced them) have the holes punched where needed.
Make sure that the "choke" mechanism is working for all 4 carbs.
Are the tabs on the floats at nearly 90 degrees to the valve needles? Aftermarket needles may be the wrong length, causing excessive bending of the tabs for float height adjustment. This can cause inconsistent fuel levels or binding.
When you cleaned the carbs, did you spray into the pilot jet tunnels, ensuring it flows out of the three pin-holes in the top of the carbs?
Are the Main jet needles stock or do you have aftermarket needles? The needles have not been shimmed upwards have they?
I figure that you have already considered all of these things, but these are things that come to mind.
One last thing. I would get the engine warm, and throw in some plugs to check color. Slowly throttle up to where it is having some issues but still runs. Hold it there for 5 minutes or so and kill it. Examine the plugs.
If you goose it and you get good ignition past that trouble zone of rpms, and you have good ignition at idle, I have a hard time believing that the HT coils/plugs/wires are an issue.
You said you pulled the vacuum advance hose and it seemed to run better. Did you plug off the entrance to the carb? If not, you allowed air in the mix and leaned carb No. 2. You were having issues with overly rich mixtures. When hot, the engine will run richer. Allowing air with the hose unplugged and with it running slightly better might indicate that it is rich when hooked back up.
Make double sure you have the correct pilot jets, even if they are mikunis.
Make sure that the gaskets (if you replaced them) have the holes punched where needed.
Make sure that the "choke" mechanism is working for all 4 carbs.
Are the tabs on the floats at nearly 90 degrees to the valve needles? Aftermarket needles may be the wrong length, causing excessive bending of the tabs for float height adjustment. This can cause inconsistent fuel levels or binding.
When you cleaned the carbs, did you spray into the pilot jet tunnels, ensuring it flows out of the three pin-holes in the top of the carbs?
Are the Main jet needles stock or do you have aftermarket needles? The needles have not been shimmed upwards have they?
I figure that you have already considered all of these things, but these are things that come to mind.
One last thing. I would get the engine warm, and throw in some plugs to check color. Slowly throttle up to where it is having some issues but still runs. Hold it there for 5 minutes or so and kill it. Examine the plugs.
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