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The carburetor slide needles never completely seat in and block the main jets so there is always at least some minuscule amount of fuel flowing through the main jets even at idle.
The main jets start to flow more fuel the instant the needles start to rise along with the slides and the length/taper of the needles determines when and how much fuel the main jets can flow until the needles lift completely clear of the main jets.
Note: The carburetor slide needles are called "Jet Needles" in Mikuni-speak and the mixture/emulsion tubes are called "Needle Jets".
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sounds like a solid idea to me. 
. BTW, whats the story on the mixture screws teeny washers and O-rings? No offense intended, but as you can see, I can be pretty blunt in oder to get to the bottom of someones issue. Least that way, if its out of my experience/expertise, definitely others here can fill the gaps. Not gonna pull any punches.......you got a mess, but listening and DOING what's suggested here WILL get you out of it sooner...than later.
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